Installing streamMetabolizer
To install the streamMetabolizer package, use the
remotes package (running
install.packages('remotes') first if needed). To use
remotes::install_github() it is convenient to set a GitHub
Personal Access Token (PAT). There are several
methods for setting your PATs within R; the simplest is to call
`Sys.setenv(GITHUB_PAT=“yyyy”), replacing yyyy with the PAT you
established on the GitHub website.
You may first need to install the unitted
dependency:
remotes::install_github('appling/unitted')You can then install the most cutting edge version of streamMetabolizer with this command:
remotes::install_github(
"USGS-R/streamMetabolizer", # soon to be "DOI-USGS/streamMetabolizer"
build_vignettes = TRUE)Software dependencies for Bayesian models
The major dependency for Bayesian models is the rstan
package, and installation of that package is rarely as simple as a call
to install.packages(). Start at the rstan wiki page for
the most up-to-date installation instructions, which differ by operating
system.